- java.lang.Object
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- ij.plugin.HyperStackConverter
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Constructor Summary
Constructors Constructor Description HyperStackConverter()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
run(java.lang.String arg)
This method is called when the plugin is loaded.void
shuffle(ImagePlus imp, int order)
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String order, java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.static void
toStack(ImagePlus imp)
Converts the specified hyperstack into a stack.
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Field Detail
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CZT
public static final int CZT
- See Also:
- Constant Field Values
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CTZ
public static final int CTZ
- See Also:
- Constant Field Values
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ZCT
public static final int ZCT
- See Also:
- Constant Field Values
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ZTC
public static final int ZTC
- See Also:
- Constant Field Values
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TCZ
public static final int TCZ
- See Also:
- Constant Field Values
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TZC
public static final int TZC
- See Also:
- Constant Field Values
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Method Detail
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run
public void run(java.lang.String arg)
Description copied from interface:PlugIn
This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.
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toHyperStack
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").
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toHyperStack
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").
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toHyperStack
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String order, java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames. The default "xyczt" order is used if 'order' is null. The default "composite" display mode is used if 'mode' is null.- Parameters:
imp
- the stack to be convertedc
- channelsz
- slicest
- framesorder
- hyperstack order ("default", "xyctz", "xyzct", "xyztc", "xytcz" or "xytzc")mode
- display mode ("composite", "color" or "grayscale")- Returns:
- the resulting hyperstack
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toStack
public static void toStack(ImagePlus imp)
Converts the specified hyperstack into a stack.
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shuffle
public void shuffle(ImagePlus imp, int order)
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.
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